Select a genomics dataset to query and analyze

Genomics datasets are organized thematically into different portals. Different portals can contain datasets related to different diseases (e.g., Breast Cancer and Prostate Cancer), specific types of genomics data (e.g., Epigenomics and Transcription Factors), or different biological processes (e.g., Development). The same dataset can be assigned to different portals.

Find Genomics Datasets Help

Organism Sample Type
Data Type Portal
Keyword
Portal Description
AHR
Gene expression and ChIP-chip datasets related to AHR-related gene expression regulation
BCERC
Gene expression microarray datasets generated by the BCERC project (mostly private)
BPA Genomics
Genomics datasets assessing health effects of Bisphenol A
Breast Cancer
Genome-scale datasets related to breast cancer
Cancer
Cancer related genomics datasets
CGH
Comparative Genomics Hybridization datasets
CTSA
Clinical and Translational Science Awards (CTSA) program
Development
Genomics datasets related to stem cells and development
Encode ChIP-Seq
Production phase ENCODE data from Genome Browser
Epigenomics
Datasets assessing different epigenomics events on the whole-genome scale
GDS
Gene Expression Omnibus Datasets (GDS)
JRA Genomics
Juvenile Rheumatoid Arthritis (JRA)
MCF-7 Toxicogenomics
Toxicogenomics data for MCF-7 cell line
Predicted TF Binding Sites
Computationally predicted binding sites for human, mouse and rat promoters
Prostate Cancer
Genome-scale datasets related to prostate cancer
Reference
Uncategorized useful gene expression datasets
TCGA
mRNA-seq data generated by The Cancer Genome Atlas project
Toxicogenomics
A collection of toxicogenomics datasets
Transcription Factors
Genomics datasets pertaining to transcription factor regulatory targets