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- 1
- Liu X, Sivaganesan S, Yeung KY, Guo J, Bumgarner RE,
Medvedovic M: Context- specific infinite mixtures for clustering gene
expression profiles across diverse microarray dataset. Bioinformatics
2006, 22:1737-1744.
- 2
- Freudenberg JM, Joshi VK, Hu Z, Medvedovic M: CLEAN:
CLustering Enrichment ANalysis. BMC Bioinformatics 2009, 10:234.
- 3
- Sartor MA, Leikauf GD, Medvedovic M: LRpath: A logistic
regression approach for identifying enriched biological groups in
gene expression data 2. Bioinformatics 2008.
- 4
- Medvedovic M, Gear R, Freudenberg JM, Schneider J,
Bornschein R, Yan M, Mistry MJ, Hendrix H, Karyala S, Halbleib D et
al.: Influence of Fatty Acid Diets on Gene Expression in Rat Mammary
Epithelial Cells. Physiol Genomics 2009.
- 5
- Miller LD, Smeds J, George J, Vega VB, Vergara L,
Ploner A, Pawitan Y, Hall P, Klaar S, Liu ET et al.: From The Cover:
An expression signature for p53 status in human breast cancer predicts
mutation status, transcriptional effects, and patient survival. PNAS
2005, 102:13550-13555.
- 6
- Fournier MV, Martin KJ, Kenny PA, Xhaja K, Bosch I,
Yaswen P, Bissell MJ: Gene Expression Signature in Organized and Growth-Arrested
Mammary Acini Predicts Good Outcome in Breast Cancer. Cancer Res 2006,
66:7095-7102.
- 7
- Herschkowitz J, Simin K, Weigman V, Mikaelian I, Usary
J, Hu Z, Rasmussen K, Jones L, Assefnia S, Chandrasekharan S et al.:
Identification of conserved gene expression features between murine
mammary carcinoma models and human breast tumors. Genome Biology 2007,
8:R76.
- 8
- Moggs JG, Murphy TC, Lim FL, Moore DJ, Stuckey R,
Antrobus K, Kimber I, Orphanides G: Anti-proliferative effect of estrogen
in breast cancer cells that re- express ER{alpha} is mediated by
aberrant regulation of cell cycle genes. J Mol Endocrinol 2005, 34:535-551.
- 9
- Chen X, Xu H, Yuan P, Fang F, Huss M, Vega VB, Wong
E, Orlov YL, Zhang W, Jiang J et al.: Integration of External Signaling
Pathways with the Core Transcriptional Network in Embryonic Stem Cells.
Cell 2008, 133:1106-1117.
- 10
- Xu X, Bieda M, Jin VX, Rabinovich A, Oberley MJ,
Green R, Farnham PJ: A comprehensive ChIP-chip analysis of E2F1, E2F4,
and E2F6 in normal and tumor cells reveals interchangeable roles of
E2F family members. Genome Res 2007, 17:1550-1561.
- 11
- Kalma Y, Marash L, Lamed Y, Ginsberg D: Expression
analysis using DNA microarrays demonstrates that E2F-1 up-regulates
expression of DNA replication genes including replication protein
A2 3. Oncogene 2001, 20:1379-1387.
- 12
- Mikkelsen TS, Hanna J, Zhang X, Ku M, Wernig M, Schorderet
P, Bernstein BE, Jaenisch R, Lander ES, Meissner A: Dissecting direct
reprogramming through integrative genomic analysis 2. Nature 2008,
454:49-55.