Contents

• Introduction
• Start by constructing a gene list
  • Using predefined gene list(s)
  • Search for genes of interest using entrez id, symbol or description.
  • Paste a list of genes in the box provided.
  • Find predefined gene list(s) for your choice of genes.
  • Find genes with a phrase in their RIFs.
  • Find biogrid gene pairs for your gene(s).
  
  
• Start by selecting an experiment
  • Search for an experiment
  • Query experiment
  • Cluster experiment
  
  
• Miscellaneous modules
  • Filter samples and select sample grouping for analysis
  
  
• Interpreting Results
  • Interactive Treeview Browsing
  • Static heatmaps
  • Gene List Statistics
  • Kegg Pathways for submitted genes
  
  
• Case Study: Characterizing experimentally identified proliferation signature
  • Gene Expression data
  • ChIP-seq data for different transcription factors
  • Tri-methylation of histone across 5 human cell lines
  
  
• Bibliography