Laboratory for Computational Systems Biology

Home

People

Research

Publications

Teaching
Johannes Freudenberg Johannes Freudenberg
Research Associate, PhD Candidate
freudejm at uc dot edu
558-6781
 318 Kettering

Research Description
 

Education
Universität Leipzig, Leipzig, Germany, M.S. 2004 Computer Science with minor in Biomedicine
University of Cincinnati, Cincinnati, Ohio, Bioinformatics (Expected PhD by June 2009)

Professional Experience
2008 - present, Bioinformatics Research Associate, Department of Environmental Health, University of Cincinnati
2004 - 2007 Graduate Assistant, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio
2002 - 2003 Database Programmer, Center for Clinical Trials, Leipzig, Germany
1999 - 2001 Graduate Assistant, Department of Computer Science, Universität Leipzig, Leipzig, Germany

Publications

2007

  • Kaiser S, Park YK, Franklin JL, Halberg RB, Yu M, Jessen WJ, Freudenberg J, Chen X, Haigis K, Jegga AG, Kong S, Sakthivel B, Xu H, Reichling T, Azhar M, Boivin GP, Roberts RB, Bissahoyo AC, Gonzales F, Bloom GC, Eschrich S, Carter SL, Aronow JE, Kleimeyer J, Kleimeyer M, Ramaswamy V, Settle SH, Boone B, Levy S, Graff JM, Doetschman T, Groden J, Dove WF, Threadgill DW, Yeatman TJ, Coffey RJ Jr, and Aronow BJ. Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer. Genome Biology 8(7): R131. 2007.

  • Ray M, Dharmarajan S, Freudenberg J, Zhang W, and Patterson GA. Expression profiling of human donor lungs to understand primary graft dysfunction after lung transplantation. American Journal of Transplantation 7(10):2396-2405. 2007.

2005

  • Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P. Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms. Nucleic Acids Research 33(18):5914-23. 2005

2004